Package: s4vd 1.1-1

s4vd: Biclustering via Sparse Singular Value Decomposition Incorporating Stability Selection

The main function s4vd() performs a biclustering via sparse singular value decomposition with a nested stability selection. The results is an biclust object and thus all methods of the biclust package can be applied.

Authors:Martin Sill, Sebastian Kaiser

s4vd_1.1-1.tar.gz
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s4vd.pdf |s4vd.html✨
s4vd/json (API)

# Install 's4vd' in R:

install.packages('s4vd', repos = c('https://mwsill.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/mwsill/s4vd/issues

Datasets:

lung200 - Lung

On CRAN:

5.31 score 4 stars 2 packages 17 scripts 375 downloads 1 mentions 7 exports 45 dependencies

Last updated 5 years agofrom:752df71fe6. Checks:OK: 1 NOTE: 6. Indexed: yes.

Target	Result	Date
Doc / Vignettes	OK	Nov 05 2024
R-4.5-win	NOTE	Nov 05 2024
R-4.5-linux	NOTE	Nov 05 2024
R-4.4-win	NOTE	Nov 05 2024
R-4.4-mac	NOTE	Nov 05 2024
R-4.3-win	NOTE	Nov 05 2024
R-4.3-mac	NOTE	Nov 05 2024

Exports:BCheatmap BCs4vd BCssvd jaccardmat s4vd ssvd stabpath

Dependencies:additivityTests biclust class cli codetools colorspace cpp11 dplyr fansi farver flexclust foreach generics ggplot2 glue gtable irlba isoband iterators labeling lattice lifecycle magrittr MASS Matrix mgcv modeltools munsell nlme pillar pkgconfig purrr R6 RColorBrewer rlang scales stringi stringr tibble tidyr tidyselect utf8 vctrs viridisLite withr

s4vd notes

Rendered froms4vdp4.Rnwusingutils::Sweaveon Nov 05 2024.

Last update: 2015-06-12
Started: 2015-06-12

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Overlap Heatmap for the visualization of overlapping biclusters	BCheatmap OverlapHeat
Robust biclustering by sparse singular value decomposition incorporating stability selection	BCs4vd BCs4vd-class s4vd \S4method{biclust}{matrix,BCs4vd}
Biclustering via sparse singular value decomposition	BCssvd BCssvd-class ssvd \S4method{biclust}{matrix,BCssvd}
jaccard matrix	jaccardmat
lung	lung cancer microarray data set200 lung200
Stability paths plot	stabilitypath stabpath